PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0044
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 362aa    MW: 41866 Da    PI: 8.6501
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0044genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.31.9e-365818615146
         GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                  +d++ a+++L+ +++++s+ gd +qR a+yf++AL +rla+++  ly+ l +++ts    +++l+a+ +++ ++P+ k+s++ aN+ I+e +e+++++
  Gh_D08G0044  58 NDQRTANEMLKLIRQHSSEFGDGTQRSAHYFANALTTRLAGMGAPLYAHLLSNRTS---AADALKAYGVYVLACPFKKMSNFYANKRIMELAEKATTL 152
                  7899*******************************************999888887...8************************************** PP

         GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146
                   iiDf+i +G+QWp+L+q L+++++gp +lRiT+
  Gh_D08G0044 153 YIIDFGICYGFQWPCLIQLLSAQTGGPSKLRITA 186
                  *********************************8 PP
2GRAS82.28.7e-26260358276374
         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++++ +r++ E+e+ gr+i+n+vaceg+er+er et+++W+ r  + GFk+vpl+++ +k++  +++  + + + v+ + +++++gWk+r ++++S+W
  Gh_D08G0044 260 GTDDPQRMMFEKEIHGRDIMNLVACEGTERVERPETYKQWQVRTLRTGFKQVPLNQELVKKVMDMVQSSYHRDFVVDVDGHWMLQGWKGRIIYALSCW 357
                  45679*****************************************************************999************************* PP

         GRAS 374 r 374
                  +
  Gh_D08G0044 358 K 358
                  8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.94518362IPR005202Transcription factor GRAS
PfamPF035146.5E-3458186IPR005202Transcription factor GRAS
PfamPF035143.0E-23260358IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
DCLALQAAER SFYEVLCHNY PIPAGLNHYY PDDDCNSSKD KVRGRKIYQR EDVEEAVNDQ  60
RTANEMLKLI RQHSSEFGDG TQRSAHYFAN ALTTRLAGMG APLYAHLLSN RTSAADALKA  120
YGVYVLACPF KKMSNFYANK RIMELAEKAT TLYIIDFGIC YGFQWPCLIQ LLSAQTGGPS  180
KLRITAKKWE TIQLEELKIT KDEVVVVNCM HRLKNLPHSV TNQCEGDRFE TDQKHQSRIH  240
PWGRKWDIQR SVLLLKVPQG TDDPQRMMFE KEIHGRDIMN LVACEGTERV ERPETYKQWQ  300
VRTLRTGFKQ VPLNQELVKK VMDMVQSSYH RDFVVDVDGH WMLQGWKGRI IYALSCWKPV  360
KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-245635815375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.250873e-81ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO33261923e-81
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743824.11e-176PREDICTED: scarecrow-like protein 30
SwissprotP0C8833e-92SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A2P5RZ860.0A0A2P5RZ86_GOSBA; Uncharacterized protein
STRINGGorai.004G005200.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-94GRAS family protein