PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0041

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 319aa MW: 34193.9 Da PI: 9.6944

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0041	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	71	131	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Gh_D08G0041 71 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 131 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-36	55	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-33	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVFSSVPIYL DPPNWQQQHN HHQHGGVGTG STENPQLPPL PPPSHVGVGG AGSIRPGSMA 60 DRARLAKIPQ PEAALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV 120 GGGCRRNKKN KSSSSKSTGS AEKQGGSNST NAVNNNIPSE ITGHLPQQTP HLPFMASLQS 180 FSQFGMGNIG LNFGGSANGG QAEMGFHIGT NSGMSSPILS SAGHQQFPFF EPTNGLYSLQ 240 SEGTEGSSSM VGESQLLRSI TSSSRVSQLA PVKMENNNNQ GLNLSRSMMN NASENNQYWG 300 GNNWTDLSGL NASNTNHLL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15573	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719935.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
TrEMBL	A0A1U8LZE8	0.0	A0A1U8LZE8_GOSHI; dof zinc finger protein DOF2.2-like isoform X1
STRING	Gorai.004G004800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-52	OBF-binding protein 3