PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2493
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 280aa    MW: 31979.8 Da    PI: 5.32
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2493genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1892142255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+++AeIrd + +g  +r++lg+f++ae Aa a+++a+ +++g
  Gh_D07G2493  92 SYRGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDSAEAAALAYDQAAFSMRG 142
                  69*******.**********43343..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-1991151No hitNo description
PROSITE profilePS5103223.02492150IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2292152IPR016177DNA-binding domain
PfamPF008476.8E-1492142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3092151IPR001471AP2/ERF domain
SMARTSM003802.1E-3592156IPR001471AP2/ERF domain
PRINTSPR003673.8E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.8E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEDSWLLQYS KNADSSWFGS EEAFSSSCEW DELLLNFNIS QETAWMDLLG DDEEEEEEEE  60
ERGKVSSECS NNSIDGVKEE EICAEEPKEV KSYRGVRKRP WGKFAAEIRD STRRGARVWL  120
GTFDSAEAAA LAYDQAAFSM RGPLATLNFP IEAVKASLKE LKGRCDENKG WSPVVDLKNR  180
YSLRKRSKNK KIKPNDAALR QQQNLLSGVS LLLHQTLNHR WAILHSPDIT FPVKPLFGQQ  240
ASCSHYQTSA ISNDNPRTRC LQLIEETYIK SYSDKRLRVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2691151161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-2682152874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190LRKRSKNKK
2184190KRSKNKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.227801e-136boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157210.0JX615721.1 Gossypium hirsutum clone NBRI_GE59864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732605.11e-148PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U8N0L81e-147A0A1U8N0L8_GOSHI; ethylene-responsive transcription factor 1B-like
STRINGGorai.001G252600.11e-128(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1898938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-32ethylene response factor 1