PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2458
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 370aa    MW: 41734.3 Da    PI: 6.7926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2458genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC+ C ksF +   L  H+r+H
  Gh_D07G2458  4 HKCKLCFKSFANGRALGGHMRSH 26
                 79********************9 PP
2zf-C2H214.20.00013241263123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  Gh_D07G2458 241 YKCETCNKVFKSYQALGGHRASH 263
                  9************9999998887 PP
3zf-C2H211.40.001297319123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C ++Fs+   L  H r+H
  Gh_D07G2458 297 HECPVCFRVFSSGQALGGHKRSH 319
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.02E-5330No hitNo description
SMARTSM003550.051426IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887241268IPR007087Zinc finger, C2H2
SuperFamilySSF576674.79E-9241263No hitNo description
SMARTSM003550.01241263IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-11241265IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
SuperFamilySSF576674.79E-9292319No hitNo description
PROSITE profilePS501579.224297319IPR007087Zinc finger, C2H2
SMARTSM003550.19297319IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-11297319IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEKHKCKLCF KSFANGRALG GHMRSHMLNL PIPPKLAEQQ RLGLPRPANQ LSEESESESA  60
SASYSSSSSE EEEGEEKGQF YGLRENPKRS VRLVDPEFID AGSAVLQDRE SETESSKNPT  120
RRRSKQTRRI LENHQQQRQE QQEERKKLKV NNSSSNNNNN NQVSKTEPWA EPEPVSSISD  180
ATTEEDVAFC LMMLSRDQWK SKVLHLDDEE GTEIEKSTEQ SYELQEYFKL SKVNRATRGK  240
YKCETCNKVF KSYQALGGHR ASHKKMKAYS PPATHDSELE PENVGTRPSS MTDKKIHECP  300
VCFRVFSSGQ ALGGHKRSHV VATTETPVRS SKKLGDSFID LNLPAPMDDD DASQIELSAV  360
SDAEFVNHIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198480.0boll| ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642851e-137JX964285.1 Gossypium hirsutum clone NBRI_TRANS-554 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745649.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8P5Z40.0A0A1U8P5Z4_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.001G175400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-66C2H2-like zinc finger protein