PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2445
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 685aa    MW: 75358.6 Da    PI: 6.8273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2445genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.9e-06279300426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C++f++ G Ck Gd C +aHg
  Gh_D07G2445 279 APCPDFRK-GSCKQGDLCEYAHG 300
                  59******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1456155IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-965144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001776106IPR002110Ankyrin repeat
PROSITE profilePS5029713.46976151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.2E-1576156IPR020683Ankyrin repeat-containing domain
CDDcd002048.75E-1478151No hitNo description
PROSITE profilePS500889.805111146IPR002110Ankyrin repeat
SMARTSM002480.036111143IPR002110Ankyrin repeat
SMARTSM003567.8E-5275301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4279301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.446280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4307338IPR000571Zinc finger, CCCH-type
SMARTSM0035617310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MCGNLDTPSS SEETKTMDCL TGAVGNNCSF SVLLEFAADN DVEGFQRYMI ASHVSLFGEV  60
GLWYGCRKSS KQMVVEQRTP LMIAAWYGSV DVVKLILSLS EVDVNLSCGS DKRTALHCAA  120
SGGSIRAVEV VKLLLLAAAD PCVSDAYGYR PSDVIVAPWN MPQIKVSLEE LLNNRGPVCL  180
EKLHDSGSSS LVSDVKITAV TCKTTDNIVS SAQEKEYPVD PSFPDINSSI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCAP CPDFRKGSCK QGDLCEYAHG  300
VFESWLHPAQ YRTRICKDGT TCKRRVCFFA HRPEELRPLY LSSGLGIQSP QSAASSVITM  360
DKMGVLNLFP GSPSALTAIS VSPFSPAMSP SANVISQAPT GWPQHVPTLH LSGSNLQGSR  420
LRSSLNAKDM SAMELNMSLD FEVHQQRYLS NLSCLSQPHL AHKSSNLDGL FSTEVSSTRC  480
PNQVTAMPIL SPVLSDKLEQ QQRVLSPIET NIFSPKNDHP LLQSTFDASL SERISTWNVE  540
PLSPLNSLLS ASTNLEKLQQ SLHNLSTQEL GYKLSNDLES KGVTGSLLNS WPKRETPNCK  600
VDWPVQEDEF SQFHKSCSIL HHGMEPTVSL VQSMVKESPS VPTTLATSSR TLPVKGSNSN  660
FRGKLGDHEI FLALCKQLQL DKIMA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151592e-80JX615159.1 Gossypium hirsutum clone NBRI_GE59007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478728.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_012478734.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_012478742.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_012478750.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_012478756.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_012478763.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D2LYK50.0A0A0D2LYK5_GOSRA; Uncharacterized protein
STRINGGorai.001G138300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2236145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain