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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D07G2146 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
LBD |
| Protein Properties |
Length: 247aa MW: 27078.9 Da PI: 5.9621 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D07G2146 | genome | NAU-NBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 124.5 | 5.1e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+C aCk+lrrkC+++Cv+apyf +eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a+la+l
Gh_D07G2146 7 PCGACKFLRRKCVRGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPVYGCVSHIFALQQQVAKLEAQLASL 104
7*************************89*******************************************************************998 PP
DUF260 98 kee 100
e+
Gh_D07G2146 105 TEQ 107
876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFSH EQGATHFAAI HKVFGASNVS KLLAHLPVTD 60
RCEAAVTISY EAQARLQDPV YGCVSHIFAL QQQVAKLEAQ LASLTEQASQ SIANGSVTSN 120
PNDGKLPCSQ LQDVQSWFHP DNSSMAPNFN PSSYGEHGFS NPNSSGIYYE NSIVSSGEDH 180
ISFTTFVEAP HSMSSSLDMQ TNNRQWSFQD VDDLQSMAFR YAQNSRRRGL NGEETVHEDT 240
MDLPVLN
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in unelongating basal internodes, at the base of shoot in parenchyma cells adjacent to the peripheral vascular cylinder of the stem, and root pericycle cells (PubMed:15829602). Expressed in lateral and adventitious root primordia, tiller primordia, vascular tissues, scutellum, and young pedicels (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
| Publications
? help Back to Top |
- Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
Genetic control of root development in rice, the model cereal.
Trends Plant Sci., 2010. 15(4): p. 219-26
[PMID:20153971] - Kitomi Y, et al.
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
Plant J., 2011. 67(3): p. 472-84
[PMID:21481033] - Coudert Y, et al.
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
BMC Genomics, 2011. 12: p. 387
[PMID:21806801]
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