PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2141
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 200aa    MW: 22472.2 Da    PI: 7.1785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2141genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000114163123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H+++H
  Gh_D07G2141 41 YTCAFCKREFRSAQALGGHMNVH 63
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-63867No hitNo description
PfamPF139122.1E-64065IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0324168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MERSDWSTSK MGKWEFNRLD LVELEGEQYS CCKSPWPPKY YTCAFCKREF RSAQALGGHM  60
NVHRKDRARL RLFSSWVLES QNPNKPNSNP NHPNPNPINS SSPSDDFSVY PHHSLLSPLF  120
PTPSSSVLTY GENPKKSLNP QLGDLSQENT MTPFPAAVEN LKVHAPNYKL EVGGVTGLDL  180
VTGFGDTKEV LDLDLRLGHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-123663229superman protein
2l1o_A2e-123663229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5801371e-53JX580137.1 Gossypium hirsutum clone NBRI_GE12506 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724973.11e-146PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1U8MH931e-145A0A1U8MH93_GOSHI; transcriptional regulator SUPERMAN-like
STRINGGorai.001G251100.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-22zinc finger protein 11