PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1868 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 659aa MW: 74599.1 Da PI: 6.036 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.9 | 2.2e-25 | 84 | 169 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++ +s++skr+g++++ + Cs+ g+++e++++ ++r+ +tgCka++++k+++++kw+++++++eHnHe++p Gh_D07G1868 84 FYREYARSVGFGITIVSSRRSKRSGKFIDVKVACSRFGSKRESNTT----LNPRSCPKTGCKARMHIKRRQNEKWVIHSFVKEHNHEICP 169 9***************************************998777....99***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-23 | 84 | 169 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 8.753 | 355 | 391 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-6 | 356 | 389 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.0E-5 | 366 | 393 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MEIDLEVPSK EQEKLIPGSD ENSDVLDAAE EIDEEDNMEL LQASFTGCED NVDVTTVEAN 60 VHEGAIFEPQ NGLEFESKET AYAFYREYAR SVGFGITIVS SRRSKRSGKF IDVKVACSRF 120 GSKRESNTTL NPRSCPKTGC KARMHIKRRQ NEKWVIHSFV KEHNHEICPD DFYYAIRGRS 180 KQPGAVSCQK KGLQLVLDEK DVELMLDFFM CMKDENPGSF YAIDFDNEKC ARSVFWVDAK 240 AGISTTIRSE SVASFFDKFM HKAATFGEFI EQLKSFSLEL YEMEAKADFE TQSKQPELRS 300 VSAFEKQMSM IYTDTVFKKF QAEILGIVSC HLQKESEDED NVVFRVDDFE ERQNFLVAWS 360 KREFDICCLC RSFEYKGFLC KHSLLVLQMS GVSDIPCHYI LKRWTQEVKI RQTLGEKSNR 420 LHYRVQRFND LCKRAIKLGE EGSLSQEAYT IALQALEKAL KNCVSLNNTG KGVCEPSTSS 480 VHGLLETDAE NYWNATTKLS KKKKACKKRK VHFDSEGVSM GQDSCQQMTS SRANALDGCS 540 VSQQDMHGMD VSSRAPTLDG CYGAQQNIQG MGQLNSISPF RGGYYSNQQN LLGLGQLHSL 600 AASDNHYGNQ QNMQGHLPFR APAMQGFDIQ EGLQDEERPL DSTHFLGIAS KHLHDKLLS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489038.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_012489046.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A0D2M1D9 | 0.0 | A0A0D2M1D9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G213700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 5e-93 | FAR1 family protein |