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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 473aa MW: 52559.9 Da PI: 7.9275 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 83 | 100 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F ++ ++ H Gh_D07G1473 83 VCENCGKEFFSWKSFLEH 100 6*************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.663 | 13 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.17E-5 | 13 | 35 | No hit | No description |
SMART | SM00355 | 2.1 | 13 | 35 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0019 | 14 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 15 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.17E-5 | 77 | 101 | No hit | No description |
SMART | SM00355 | 280 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-9 | 215 | 239 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 215 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 215 | 242 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 217 | 237 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.55E-5 | 292 | 318 | No hit | No description |
Pfam | PF13912 | 2.5E-13 | 294 | 318 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.44 | 295 | 317 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 295 | 317 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 297 | 317 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MAFIVDQQSN FKHFCRICNK GFGCGRALGG HMRAHGIGDE SGHIDGDDPA SDWEDKLGRN 60 VPPSNKRMYA LRTNPNRLKS FRVCENCGKE FFSWKSFLEH GKCSSEDAES LVSSPGSDGD 120 DGEARRGCGW SKRKRSFRAN VGNFNTMFPS SEEEDLANCL MMLSNATVYP FVTEPEESCA 180 SASKEEERRN TMNFIAPIAC RVPMDKAKGV AKGLFECKAC KKVFNSHQAL GGHRASHKKV 240 KGCFAARVDH NQADEDHDVI THEEFFPTKS MSTLQFHQGT STPLASPSKK KSKVHECSIC 300 HRVFSSGQAL GGHKRCHWIT SNAPDTSSLA KFHRFQDQME LNQERPKFID NSEPLNLKLD 360 LNLPAAGGHH DALRRKHVNP SSFKVSTGIY LQPWLGGDDA KEKEHNQQRM QQVDHDNHDN 420 NKCNSLMQNA DKEADSMVKL AKLSELKDIN MSGGSSPWLQ VGIGSATNVG FDP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016745648.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1U8P5R5 | 0.0 | A0A1U8P5R5_GOSHI; zinc finger protein ZAT9-like | ||||
STRING | Gorai.001G175500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13535 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 2e-31 | C2H2-like zinc finger protein |