PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1396
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 313aa    MW: 35600.3 Da    PI: 5.1346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1396genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20120169255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Gh_D07G1396 120 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 169
                  8********.**********965...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-30120177IPR001471AP2/ERF domain
CDDcd000188.86E-34120176No hitNo description
SMARTSM003807.3E-36120183IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21120176IPR016177DNA-binding domain
PfamPF008473.8E-14120169IPR001471AP2/ERF domain
PROSITE profilePS5103223.591120177IPR001471AP2/ERF domain
PRINTSPR003676.5E-11121132IPR001471AP2/ERF domain
PRINTSPR003676.5E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNPGRVKYTE RRTVTNKLLK ASSKWFPMES KPKAPRIVRI SVTDGDATDS SSDESEQERH  60
HTVKRHVSEI RIGDCSTFNS NKPSNKQNRP TNNKTNLVNI RSKKQQPQQQ QQQCLSNGVK  120
YRGVRQRPWG RWAAEIRDPT SRTRVWLGTY DTAEEAALVY DRAAIRIKGP DALTNFIKPP  180
ARPSPPEIEL EMTSGYDSGQ ESHSLCSPTS VLRFQSNEET ELQTESKDDS TTQTGWSPVK  240
ELSQYPSNLL DEFLLTDPVV LYDYLDSDNP TPIFFDELSL PEASSNLEHD YGDISIQLDV  300
DFGSCSWDVD NYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22116176162ATERF1
3gcc_A6e-22116176162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.98940.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481558.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A0D2NA440.0A0A0D2NA44_GOSRA; Uncharacterized protein
TrEMBLA0A1U8P3840.0A0A1U8P384_GOSHI; ethylene-responsive transcription factor CRF5-like
STRINGGorai.001G156900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-53cytokinin response factor 5