PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 337aa MW: 38727.1 Da PI: 9.5174 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.8 | 9.1e-33 | 29 | 133 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l Gh_D07G1322 29 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsGKHRL 126 89****************************66677899*************************************************66577788889 PP EEEEE-S CS B3 93 vvkvfrk 99 ++ ++r+ Gh_D07G1322 127 YIDWRRR 133 9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-42 | 21 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.68E-31 | 26 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-27 | 28 | 128 | No hit | No description |
Pfam | PF02362 | 3.4E-30 | 29 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.058 | 29 | 134 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-24 | 29 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MMDLSLGSCN NIEESNTGSS RCIEKEYMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS 60 SNEKGLLLNF EDRNGKSWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGE 120 SGKHRLYIDW RRRPNAPNPT SFAHFQMQNQ FNFPQSVRWG GGIYSLPQSY EPLHRLNYSI 180 YPYNHHHQRQ QHQQLQQQQH QAITYGNVAQ SQYYLRSSSS GSYHHHHHHQ PQQIGAMQEG 240 RVEPMVIESV PVVQGNKTAA KRLRLFGVNM ECPTPTTDES SSSSPHATIV SDHDSPYFPS 300 SSLQSRLSNN NTPFPLSRMQ AEYSKKGKSS LSFDLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-67 | 24 | 136 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-67 | 24 | 136 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614289 | 0.0 | JX614289.1 Gossypium hirsutum clone NBRI_GE57566 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612681.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_017612682.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 3e-86 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0D2LZ04 | 0.0 | A0A0D2LZ04_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G150200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-78 | B3 family protein |