PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1299
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 527aa    MW: 57057.5 Da    PI: 7.0595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1299genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31275333259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+
  Gh_D07G1299 275 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKSILITTYEGNHNHP 333
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33259335IPR003657WRKY domain
SuperFamilySSF1182904.71E-28267335IPR003657WRKY domain
PROSITE profilePS5081129.964269335IPR003657WRKY domain
SMARTSM007741.6E-37274334IPR003657WRKY domain
PfamPF031064.8E-27276333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEKQHSRELT FLHSGDSLRQ NSGVADRTLD DSRDHVEPHI KEMDFFSSQY QSHDHHHHHQ  60
EGNTNNNGSS SFIDSSVNIG LNLLSSSPGV SRATNEEKPK AQESALKMEL EKLNEENRRL  120
RSMLDQITKN YNELQGQLLM ALQKQAHRNQ QDQQKDAVNG MASTIMSVQQ FMDPRPSAAL  180
DVNEPSGSDD KTQELSASPE NTIEIVSKEY DHRMVQNMPG KQVSIEDGTD QTSQSWGSLK  240
SPKIDQSKNE DQVSEGPFRK ARVSVRARSE APLISDGCQW RKYGQKMAKG NPCPRAYYRC  300
TMAVGCPVRK QVQRCADDKS ILITTYEGNH NHPLPPAATA MANTTSAAAA MLLSGSTKSK  360
DGLPTSAYYP SLPYASSMAT LSASAPFPTI TLDLTQGPNA VQLLRPPPSG ASFPLPLHGY  420
PQLLGNPMFG PPKLSTASPA MQLGQRPASM VETVTAAIAS DPNFTAALAA AISTIMGPPR  480
NQGNSSNNND ENNNSSNGVG APALPGSPQI QQSCTTFSSK ACTNKPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21261337176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.83291e-35boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO64813251e-35
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698210.0KF669821.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745424.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A1U8P5C80.0A0A1U8P5C8_GOSHI; probable WRKY transcription factor 47
STRINGGorai.001G147900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-68WRKY family protein