PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1233
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 409aa    MW: 46620.4 Da    PI: 5.5851
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1233genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.56.3e-22111204185
     trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +W+++ v++Li++++ ++++ + +         +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ ++++++++++ d++
  Gh_D07G1233 111 KWKDNVVRLLIAVVSCVGDEEGVDGlkrksrilQKKGKWKMVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCGVVENHSLMDSM 204
                  7**************666655543223344566**********************************************669******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-18109231No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDDSGLECGF LSGPNGGLFD LESPIQREQR PQNHMVMMTG LGNEHRSTGL TEAKGSSQKG  60
FPMNFGKGKG ISPVIAITDG SMSDEDEPSY NEDGNREKCE GKNGWPWKRM KWKDNVVRLL  120
IAVVSCVGDE EGVDGLKRKS RILQKKGKWK MVSKIMISKG CHVSPQQCED KFNDLNKRYK  180
KLNDILGRGT SCGVVENHSL MDSMPHLSQK AKDDVKKISN SKHLFYQEMC AYHNGQTIPN  240
CQDLDLQGCI PSERCLDNNG SDEEEADSED DDDNDVDDDD DDYAVCEEER MGEVKERKKA  300
SAECGGHDGF KFQEGTRSSM VGKDRIKRQM VQLQEERVKL QTEAFELEKQ RFKWVQYCSK  360
KDRELERLRL EKERRRMENE QSILQLRRKV VEVGSLGIDR QSQIDMCSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.244289e-54ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745271.10.0PREDICTED: uncharacterized protein LOC107954275
RefseqXP_016745272.10.0PREDICTED: uncharacterized protein LOC107954275
TrEMBLA0A1U8P2420.0A0A1U8P242_GOSHI; uncharacterized protein LOC107954275
STRINGGorai.001G139700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167391012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-62sequence-specific DNA binding transcription factors