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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 358aa MW: 40547.3 Da PI: 8.778 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 198 | 217 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Gh_D07G1074 198 FACSICSKTFNRYNNMQMHM 217 78*****************9 PP | |||||||
2 | zf-C2H2 | 16 | 3.5e-05 | 282 | 304 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Gh_D07G1074 282 FMCRKCGKTFAVKGDWRTHEKNC 304 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.61E-6 | 167 | 221 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 198 | 225 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 198 | 220 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 198 | 217 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.6E-4 | 198 | 217 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 200 | 220 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 245 | 277 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.9E-6 | 267 | 302 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-6 | 278 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.704 | 282 | 302 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 35 | 282 | 302 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MNMGFRSYHV AEDKTLCFQA PTFIEWLKPS SSSSPSSSPS SSSSSTISSS YVAQHVQLIN 60 PMNIMKLPLI SFQQQQQQQQ YHDFHKHQVG EETIQCLPLL SRFTENKPLK EEALQKVMSV 120 GDVKEEKIEK VTVSLHIGLP NSSAAAAAEG DDNIPVVDHK ILKEEEPMKK TFHGCSFNTM 180 SRFWIPTPAQ ILVGPMQFAC SICSKTFNRY NNMQMHMWGH GSEYRKGPDS LKGSQPAAML 240 RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ THYKRKHGAK PFMCRKCGKT FAVKGDWRTH 300 EKNCGKLWYC TCGSDFKHKR SLKDHIRSFG KGHSPHPSLE GFEDDKECIT GSEDEFAH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744007.1 | 0.0 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 1e-131 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A1U8NYH1 | 0.0 | A0A1U8NYH1_GOSHI; zinc finger protein WIP3-like | ||||
STRING | Gorai.001G121700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-126 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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