PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0916
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 227aa    MW: 25797.2 Da    PI: 10.4463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0916genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-12107148351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Gh_D07G0916 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 148
                  79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-6106149IPR001471AP2/ERF domain
SMARTSM003801.7E-4106165IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-8107151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-6109157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKSSFL SPLSRFFCNG NPPESSSQNA KSISVHPMPS DPVNHIHGKS  60
IVKVHSGSPN VSGSSKEPHY QPFSGQTIKR RKRHRRKHVQ NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGSQEEAA RLYDRAAFMC GREPNFELPE EEKQELSRFK WDEFLAYTRR  180
SITNKKYKQR LGVEPQKRSE PVIENSDLDS KRGADSSSAS EEVGPDT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745016.11e-169PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016745017.11e-169PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016745018.11e-169PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP94e-47ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1U8P1C21e-168A0A1U8P1C2_GOSHI; ethylene-responsive transcription factor-like protein At4g13040
STRINGGorai.001G105100.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-49ERF family protein