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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D07G0654 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 312aa MW: 35797.7 Da PI: 4.5263 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D07G0654 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.8 | 1e-19 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ e++++LAk+lgL+ rqV +WFqNrRa++k
Gh_D07G0654 96 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 149
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.6 | 5.5e-41 | 95 | 185 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ +L ke+++L++e+
Gh_D07G0654 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEV 185
69**************************************************************************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MAGGRVFSCN NTNSVGGSNN LSVLLQSQRV PSSSEPMDPL FIPRPGSSPY SFFVSGTRSM 60
VSFEDVHGGN RSFFRSFDEE ENGDEDLDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP 120
ERKTQLAKEL GLQPRQVAIW FQNRRARWKT KQLEKDYDTL QASFNTLKDD YGNLLKEKDK 180
LKQEVLTFES LIEFKPLYGF GLILILVYQV LQLTDKLVMK EKNNSELSDV NTVCQEPPQK 240
PVDSDSPHSS YPFEPDQSDT SQDEEDNLSK ALFQPSSYIF PKLEDNDYSD PPASSCSYGF 300
HVEDHAFWSS AY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 143 | 151 | RRARWKTKQ |
