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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 281aa MW: 31256.5 Da PI: 6.3148 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+++Fs+ L H+r H Gh_D07G0423 8 CRICDRRFSNGKALGAHMRFH 28 *******************99 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ +F+++ L H +H Gh_D07G0423 153 YKCETCNITFRSHQALGGHTASH 175 9*************999998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.75 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.82E-8 | 7 | 28 | No hit | No description |
Pfam | PF13912 | 2.9E-4 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.82E-8 | 148 | 175 | No hit | No description |
Pfam | PF13912 | 7.0E-6 | 153 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.075 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.55E-6 | 202 | 232 | No hit | No description |
PROSITE profile | PS50157 | 12.154 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.0E-9 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDQYPKACRI CDRRFSNGKA LGAHMRFHFP NFSIPPSSSS SNPPLSSLTS TKHELSTDST 60 ESSENPSGKR SKQLPKFSSD MAMNDSPSDS VSSPFSMEDA ALCLLMLSRN ERTDNPKLTQ 120 GNEISDHGAG FDYEKDEEDG EFFTAAKAHP KCYKCETCNI TFRSHQALGG HTASHNFKNK 180 KIAQEEEAEN GGDATDHKIH QQRIFECEFC DRVFQSGQAL GGHKKIHFGY SPSVTHNRIS 240 IKFKPTVQPF DLNLPPSEQD DDEVSLAQNT VPQPSIYDKA M |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016747224.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1U8PAF1 | 0.0 | A0A1U8PAF1_GOSHI; zinc finger protein ZAT9-like | ||||
STRING | Gorai.001G049300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16232 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-22 | C2H2-like zinc finger protein |