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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 846aa MW: 94766.3 Da PI: 7.7476 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.5 | 4e-09 | 216 | 279 | 17 | 81 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 + +++rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Gh_D07G0404 216 VAVQSKRGKTRADKDREVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 279 556778999999*****************************************9965555.3445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56112 | 1.43E-15 | 683 | 837 | IPR011009 | Protein kinase-like domain |
CDD | cd00180 | 4.46E-11 | 697 | 834 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 5.2E-7 | 698 | 835 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSALVVTAT GPPFISAPLY 60 VPTGATSPYE QQFESVNPKR SRYNSGQWKL LPSPSSLQSQ AQMAIITSES SPSPTNPINP 120 QTQAQTTAAS SSDAASSPSH SPLPSTTSGQ ETNKPEDQQF HHQFRKGKYV SPVWKPNEML 180 WLARGWRIQY QGGSDAPGSS SRSGHQEIGP LTGSDVAVQS KRGKTRADKD REVAEFLNKH 240 GINRDAKTAG TKWDNMLGEF RKVYEWERGG EREQVGKSYF RLSPYERKLH RLPASFDEEV 300 FEELSKFMGP RMRTSQSRGA SAIASSDDGR SVLSGPRPLP PPPPFKVDEL PLSGFTERAQ 360 LPFAEPSIRS MPPLEFQDPT DYYIGCLRVP PTILPGLFEL SWHLQEPLPE EYRFPLRKDV 420 YRDLPAGKEV LFTTTSELLD CRAMVYDVLS SIIRTNPSLS AATATSRDSF IGLWDDCINR 480 VISKFCSVEM VIIRKPSSSS TEPLQDQWPN VTGFVRNFCL WRGEETDQVR EGHPDPSSSL 540 VEKLLWTYMD LPYVLGYYAV GYMVTFCALS RSQDRILRTD LYSVDLSSPS ERLKALVPCC 600 RIAGLLPLLA DRCFNTISNV GSYKQFPFSD FERINLRNGS IMEMTPNTVT RSFSNKKKWA 660 AVKEIYDILD HRIPHSELIC RACEKDLVLV FKPRGCKFKP INCEQLVEAV KYVTKALVAL 720 HDLCFMHRDL GWDKVLRRSD TENEWFVCGF DEAVGAPQIY PHPVAGADTD ARGRHAPEMG 780 RGLHGVKVDV WGVGYLIKTC GLTNVPKMLR ELETRCLDQN PEQRPTAADC YHHLLQVQSA 840 SSGAPY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465877.1 | 0.0 | PREDICTED: uncharacterized protein LOC105784438 isoform X2 | ||||
TrEMBL | A0A0D2QKQ5 | 0.0 | A0A0D2QKQ5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G047400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8356 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 6e-07 | Trihelix family protein |