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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 166aa MW: 18667 Da PI: 8.4042 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 205.7 | 1.8e-63 | 8 | 158 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 ++eq+Cy+ CnfCn +lavsvP +slf vtvrCGhCt+l svn+a a q l+ ++ + +++++++ + ++++ +t+ s+ s+ Gh_D07G0365 8 APEQLCYIPCNFCNIVLAVSVPCSSLFDSVTVRCGHCTNLWSVNMAAAFQSLSWQDA----------QGASYATQDYRTDQGSSSKCNTKFSMRAPSK 95 79**********************************************999999996..........3344444444444445555555555555566 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 n +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Gh_D07G0365 96 NATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158 6666655....89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-71 | 8 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-8 | 101 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-4 | 106 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSTCTNLAPE QLCYIPCNFC NIVLAVSVPC SSLFDSVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDAQGASYA TQDYRTDQGS SSKCNTKFSM RAPSKNATEE RVVNRPPEKR QRVPSAYNQF 120 IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ENQKSN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744567.1 | 1e-122 | PREDICTED: axial regulator YABBY 5-like | ||||
Refseq | XP_016744568.1 | 1e-122 | PREDICTED: axial regulator YABBY 5-like | ||||
Refseq | XP_016744569.1 | 1e-122 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 4e-88 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U8P2Z4 | 1e-121 | A0A1U8P2Z4_GOSHI; axial regulator YABBY 5-like | ||||
STRING | Gorai.001G042700.1 | 1e-118 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-90 | YABBY family protein |
Publications ? help Back to Top | |||
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