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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 43678.9 Da PI: 7.396 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.2e-08 | 137 | 157 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd+C FaHg Gh_D07G0096 137 ACPDFRK-GNCRKGDSCEFAHG 157 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 84 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.08 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-6 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-6 | 137 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.798 | 167 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4 | 167 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MMLGETHRPN PTVHVPPWPD LDDDQTDVVY SPIHYNATDN NLSSNGNPFY LHEALSALQR 60 YLPSNGPDVE LDSEFPGLDS PDSPVDAYSC DHFRMYEFKI RRCARGRSHD WTECPYAHPG 120 EKARRRDPRK YHYSGTACPD FRKGNCRKGD SCEFAHGVFE CWLHPARYRT QPCKDGSGCR 180 RRVCFFAHTP DQLRLVSSTD TYDGSPCGKT LTFWSSPGSS SPPVSPRAES CSSPPVSPMA 240 QSLSRSLGSA SINEMVTSLR NLQLGKGKSW KTQVGCCSPS SPSSFGSPRA AMIRPGFCSL 300 PSTPTRNLTR PGISYPDSWD KACEEEPVME RVESGRDLRA KMFEKLSKEN SLERVNPDQS 360 SGGPDLNWVS DLGKQAMGII VMVDIVLFIK YF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9373 | 0.0 | boll| ovule| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016719710.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 49-like | ||||
Swissprot | Q9M0G2 | 1e-145 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A0D2LRP5 | 0.0 | A0A0D2LRP5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G009900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-136 | C3H family protein |
Publications ? help Back to Top | |||
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