PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0033
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family S1Fa-like
Protein Properties Length: 625aa    MW: 68190 Da    PI: 6.7178
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0033genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA22.13e-07232278752
         S1FA   7 eakGlnPGlivllvvgglllv.flvgnyilyvyaqknlPPrkkkPvs 52 
                   + Gl  G iv +vvg++l+  +++   il+   q+  P rk kPv+
  Gh_D07G0033 232 KSSGLSTGAIVAIVVGSVLVAlLFLLCLILFLCKQQRRPDRKEKPVT 278
                  578**************99641345579*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.102.0E-4026206IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082631.6E-82661IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520582.87E-3445207IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138556.7E-779126IPR001611Leucine-rich repeat
PfamPF046894.9E-5232279IPR006779DNA binding protein S1FA
PROSITE profilePS5001130.365327594IPR000719Protein kinase domain
PfamPF000694.2E-38330588IPR000719Protein kinase domain
SuperFamilySSF561128.81E-59331591IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.207.0E-14333402No hitNo description
CDDcd140661.47E-87333594No hitNo description
Gene3DG3DSA:1.10.510.109.0E-36403606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MVLSFSSVIL VSVLILSYGV NSEPVQDKQA LLTFLSMVKH ENRIQWNSST SACDWVGVEC  60
DATRSFVFTL RLPGVGLVGS IPPKTIGLLN RLRVLSLRAN RLSGTVPADF SNLTLLRSLY  120
LQENQFTGSF PSSLTRLTRL VRLDLSSNNF TGPIPVGVNN LAHLTGLFLQ NNTFSGSLPA  180
INSDGLDDFD VSNNNLTGSI PYTLSKFPAS SFAGNIGLCG GPLRACNPTY RKSSGLSTGA  240
IVAIVVGSVL VALLFLLCLI LFLCKQQRRP DRKEKPVTEE TRAAPPAEAG TSSSKDDVTG  300
GSIEREKNKL VFFESGVYSF DLEDLLRASA EVLGKGSVGT SYKAVLEEGT AVVVKRLKDV  360
AASKREFEMQ KEKLGKIKHE KVVPLRAFYY SKDEKLLVYE FMPNGSLSAL LHGDRGSGHT  420
PLDWDNRIKI ALSTAKGLSY LHLSQVAHGN IKSSNILLGP NREACISDYG LNPLFGNTTP  480
PSRVTGYRAP EVLETRNVTF KSDVYSFGVL LLELLTGKSP SQASLGEEGI DLPRWVQSVV  540
REEWTAEVFD AELMRYHNIE EEMVQLLQIA MTCVSVVPDQ RPAMVDVVRM IEDLNRAEID  600
DGLPQSSDAN TPPTESRIPP TSATP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A2e-5231359525320Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B2e-5231359525320Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_A3e-5231359525320Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B3e-5231359525320Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.219780.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5254101e-145HQ525410.1 Gossypium herbaceum clone NBRI_E2_2226 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720646.10.0PREDICTED: probable inactive receptor kinase At2g26730
SwissprotO487880.0Y2267_ARATH; Probable inactive receptor kinase At2g26730
TrEMBLA0A1U8M1F70.0A0A1U8M1F7_GOSHI; probable inactive receptor kinase At2g26730
STRINGGorai.001G003200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM445422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.32e-12WRKY family protein
Publications ? help Back to Top
  1. Honys D,Twell D
    Comparative analysis of the Arabidopsis pollen transcriptome.
    Plant Physiol., 2003. 132(2): p. 640-52
    [PMID:12805594]
  2. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  3. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  4. Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX
    Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.
    Mol. Cell Proteomics, 2007. 6(10): p. 1711-26
    [PMID:17586839]
  5. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  6. Hazzouri KM,Mohajer A,Dejak SI,Otto SP,Wright SI
    Contrasting patterns of transposable-element insertion polymorphism and nucleotide diversity in autotetraploid and allotetraploid Arabidopsis species.
    Genetics, 2008. 179(1): p. 581-92
    [PMID:18493073]