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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G2303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 26249.2 Da PI: 8.0872 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00026 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H Gh_D06G2303 84 YKCSVCNKAFNSYQALGGHKASH 106 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H r+H Gh_D06G2303 136 HECSICHKSFPTGQALGGHKRRH 158 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 80 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.201 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.59E-10 | 84 | 158 | No hit | No description |
Pfam | PF13912 | 2.3E-13 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0071 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-13 | 136 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.473 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MALEAINSPT SATAPFRFDD TNLHCLESFT KRKRSKRPRL DHVTAEEEYL ALCLIMLARG 60 GGQRSPSPTT MPEPTSTEEQ KPSYKCSVCN KAFNSYQALG GHKASHRKLS GGNDDQTTSA 120 TGTAGGVVKS SGGKSHECSI CHKSFPTGQA LGGHKRRHYE GGAGNNNAGA TATASSVTES 180 EGVGSTNTNT NTHISNRDFD LNMPVLLEFS PANFFVSAAG DDEVQSPHPA KKPCLSIPPK 240 IEVNLTI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3286 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452438.1 | 0.0 | PREDICTED: zinc finger protein ZAT10-like | ||||
Swissprot | Q96289 | 3e-63 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | A0A2P5PWZ1 | 0.0 | A0A2P5PWZ1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G025200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 6e-49 | salt tolerance zinc finger |