PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2244
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 409aa    MW: 46185 Da    PI: 6.4571
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2244genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.75e-26292376186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev++L+ +r+ +e+++  + +k   W+e+s+ m   g++rs+k+Ckekwen+nk+++k   + kk+  e+s++cpyf++l+
  Gh_D06G2244 292 RWPDAEVQVLVMLRSTLEHKFHITGSKCSIWDEISAGMYNMGYSRSAKKCKEKWENINKYFRKSMGSGKKH-HENSKRCPYFHDLD 376
                  8******************************************************************9998.78888*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.899285349IPR017877Myb-like domain
PfamPF138372.2E-18291377No hitNo description
CDDcd122032.31E-23291355No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MELFTGGREA FPQHVAPFPD LTAIMEPAED LMMSDHRPTL PPRKLRPIRY NGRSPASSQA  60
EDHSEFAEAV ELVGDEVCAI NGSSFDYLTP PIKAEVGDVT ATVGGGGNGV EGPPSSEQRG  120
EPSGSSSSDS DDDLSATGNE PLKKRKRKSR KKIKLFLEKL VMKVMDKQEQ MHKQLMEMIE  180
KREKERLIRE EAWKRQEMER VKRDEEARAQ EMSRSIALIS FIQNALGHEI EIPISTMSCM  240
EENGVKDASE DHIQKDTVNP FGPTNRWQEG MMQANGAENH EGGVSCDPNN RRWPDAEVQV  300
LVMLRSTLEH KFHITGSKCS IWDEISAGMY NMGYSRSAKK CKEKWENINK YFRKSMGSGK  360
KHHENSKRCP YFHDLDVLYK NGFGNPVNHI NCIKVDNMDN GERLKGNEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147KKRKRK
2142150KKRKRKSRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755667.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
TrEMBLA0A1U8PWY50.0A0A1U8PWY5_GOSHI; trihelix transcription factor GT-2-like isoform X1
STRINGGorai.010G248600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-41Trihelix family protein