PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_D06G2050

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 142aa MW: 16205.8 Da PI: 8.8877

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2050	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.2	2e-36	16	111	2	96
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C aCk++rr+C++dC +ap fp++++++f+n+hklFG++nv+kl+++l +++++++am+++v e+++ra+dPv G++++i++lq+q+e+++ael++ Gh_D06G2050 16 CLACKYQRRRCPADCSFAPNFPHDREQQFKNMHKLFGMANVIKLVRTLkDPSKKDIAMRTIVVESDMRAKDPVGGCYRIIQELQHQIECKEAELDK 111 9*********************************************667779*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.328	14	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-35	16	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSISTSGKTA VATEDCLACK YQRRRCPADC SFAPNFPHDR EQQFKNMHKL FGMANVIKLV 60 RTLKDPSKKD IAMRTIVVES DMRAKDPVGG CYRIIQELQH QIECKEAELD KIYYTIANCR 120 AQNAHRLQMQ TLKIDDGVII AK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-23	9	113	5	108	LOB family transfactor Ramosa2.1
5ly0_B	4e-23	9	113	5	108	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725616.1	1e-103	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	2e-34	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1U8MFJ2	1e-102	A0A1U8MFJ2_GOSHI; LOB domain-containing protein 22-like
TrEMBL	A0A2P5RP84	1e-102	A0A2P5RP84_GOSBA; Uncharacterized protein
STRING	Gorai.010G232200.1	1e-93	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36592	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-36	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]