PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_D06G2049

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 170aa MW: 19450.6 Da PI: 7.9918

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2049	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.6e-31	16	113	2	96
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG..asnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C aCk++rr+C++ C +apyfp+ ++++++n+hklFG + nv+kl++++++ +++a+++++ ++++ra+dPv G+++vi++lq+q+e+++ael++ Gh_D06G2049 16 CLACKYQRRRCPAYCLFAPYFPHGHEQQLKNMHKLFGsgMVNVIKLVRTIEDPLkKDIAIRTIMVQSDMRAKDPVGGCYRVIQELQHQIECTQAELDQ 113 9*********************************733789****65553999***********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.749	14	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-29	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSIPTSGNTA IVTEDCLACK YQRRRCPAYC LFAPYFPHGH EQQLKNMHKL FGSGMVNVIK 60 LVRTIEDPLK KDIAIRTIMV QSDMRAKDPV GGCYRVIQEL QHQIECTQAE LDQIYYTIAI 120 CRTQNAHRLQ MQKIDDGDRC QMMNKLPLIG FETEKLANLS IKSDDNIGEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-20	16	115	12	108	LOB family transfactor Ramosa2.1
5ly0_B	4e-20	16	115	12	108	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725615.1	1e-126	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	1e-31	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1U8MFR2	1e-125	A0A1U8MFR2_GOSHI; LOB domain-containing protein 22-like
STRING	Gorai.010G232100.1	1e-123	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22102	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-34	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]