PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1787
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-X1
Protein Properties Length: 884aa    MW: 98921.6 Da    PI: 8.4345
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1787genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05197215120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG H C  lCH+GpCp+Cp+
  Gh_D06G1787 197 CG-HFCLLLCHPGPCPSCPK 215
                  **.***************96 PP
2zf-NF-X116.71.6e-05249267119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  C kH C+++CH+G CppC+
  Gh_D06G1787 249 CNKHNCSEICHPGTCPPCR 267
                  779***************8 PP
3zf-NF-X1186.2e-06409428120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C++ C+ G+CppC++
  Gh_D06G1787 409 CGRHACKRRCCDGDCPPCSE 428
                  ******************85 PP
4zf-NF-X116.12.5e-05438454319
     zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                  +HkC ++CH+G C pCp
  Gh_D06G1787 438 NHKCPAPCHRGACAPCP 454
                  7***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.71E-579156No hitNo description
PROSITE patternPS01359084150IPR019786Zinc finger, PHD-type, conserved site
CDDcd060089.86E-6185233No hitNo description
PfamPF014220.0029197214IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0049197215IPR000967Zinc finger, NF-X1-type
CDDcd060085.91E-8239287No hitNo description
PfamPF014220.0061249267IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0022249268IPR000967Zinc finger, NF-X1-type
CDDcd060081.57E-8292339No hitNo description
PfamPF014220.22302320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0016302321IPR000967Zinc finger, NF-X1-type
CDDcd060084.00E-8346395No hitNo description
PfamPF014220.0029356375IPR000967Zinc finger, NF-X1-type
SMARTSM004380.95356376IPR000967Zinc finger, NF-X1-type
CDDcd060082.74E-8399447No hitNo description
PfamPF014228.6E-4409427IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092409428IPR000967Zinc finger, NF-X1-type
CDDcd060081.25E-10426474No hitNo description
PfamPF014220.011436454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012436455IPR000967Zinc finger, NF-X1-type
SMARTSM0043853493514IPR000967Zinc finger, NF-X1-type
PfamPF0142241522531IPR000967Zinc finger, NF-X1-type
PfamPF014220.13604615IPR000967Zinc finger, NF-X1-type
SMARTSM0043812604634IPR000967Zinc finger, NF-X1-type
CDDcd060081.70E-4635676No hitNo description
PfamPF014220.16647664IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014647665IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6710731IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MNTTANYQPP PSSQPPFSDS DLDSDSDSDS ENFQVGSDLS NSIFKTYLEF SSSSSSSSSS  60
SITAVDLSKI QSFLTSSSSG ALSCLICLER IRPSDPTWSC SSLCFAVFHL LCIQSWARQS  120
SDLSAARAAA RLPITAETAA KQATWNCPKC RSSYSKSEIP RCYLCFCGKL RDPPSDNPWI  180
LPHSCGEICN RPLPNNCGHF CLLLCHPGPC PSCPKSVKAR CFCGSVEDFR RCGFKNFSCN  240
KLCKKRLDCN KHNCSEICHP GTCPPCRARE TYRCRCGKKE EEKDCCDRDY RCENECKKLL  300
NCGKHVCERG CHGGDCGECP LQGNRTCPCG KRIYEGMPCD GVAPVCGATC NKLLNCGFHR  360
CPERCHKGPC VETCRTMVKK ACWCGGLKKE VPCYQDLSCE RKCLRMRDCG RHACKRRCCD  420
GDCPPCSEVC DKRLRCKNHK CPAPCHRGAC APCPIMVTIS CACGETHFEV PCGTEMDHKP  480
PKCRKLCKIT PLCRHASTSK PHRCHYAACP PCRAPCEEEY PCGHKCNLRC HGPRPPPNPE  540
FTLKPKKKKS NHQTECTPGT PCPPCPELVW RPCVGEHFGA ERMMVCSNTT RFSCDNLCGN  600
LLPCGNHYCT KTCHPLETQP SSSGHQKRSE SCEVCNLPCQ KVRMPKCSHP CPLPCHPGEC  660
PPCKVLMKRS CHCGAMVHAF ECIHYNNLSE KDQVAARSCG GPCHRKLPNC KHLCPEICHV  720
DKCPAPDKCS KKVTVRCKCQ TLKKEWICQD VQAAYRDTGN DPKDIPKNQF GLGLLPCNSD  780
CKRKIQEVES ALQLRKPKVL EKKEPENKKH GPKRRKRRDR IQEGKQVSRF QQEFVATMKR  840
LLLFIIIVAA LIAVTYYSYK GLLQLSDWMN EVELQRAKRR RSRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1811817PKRRKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161040.0JX616104.1 Gossypium hirsutum clone NBRI_GE60511 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681646.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1U8IUA20.0A0A1U8IUA2_GOSHI; NF-X1-type zinc finger protein NFXL2 isoform X1
STRINGGorai.010G197800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors