PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1781
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 657aa    MW: 71679.8 Da    PI: 5.752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1781genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08264284526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f+r G C+ Gd C +aHg
  Gh_D06G1781 264 PCPEFRR-GACPKGDACEYAHG 284
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1666152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-1771176IPR020683Ankyrin repeat-containing domain
SMARTSM002489.3E-473103IPR002110Ankyrin repeat
PfamPF127962.0E-1073141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.75973153IPR020683Ankyrin repeat-containing domain
CDDcd002041.02E-1575171No hitNo description
SMARTSM002487.0E-5108140IPR002110Ankyrin repeat
PROSITE profilePS5008812.048108143IPR002110Ankyrin repeat
SMARTSM003567.1E-6259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619259286IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5264284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5264285IPR000571Zinc finger, CCCH-type
SMARTSM0035642294317IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.972294318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MCSGSKSEHK PSSFIMEGEL QEPKAGSQSI LLELAASDDL VAFKSEVEEK GLDFGEASFW  60
YGRRIGLRKM GFEERTPLMI AAIFGSIEIL KYIIGSGKID VNRACGSDGV TALHCAVAGG  120
ADSSVEIVKL LLDASADVNC VDANGNKPVD LIVPGLKSSS NYRRKVIELL LNGDDVLYGE  180
EESDKTTMPQ LPKEGSEKRE YPMDVSLPDI NNRIYGTDDF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYPY SCVPCPEFRR GACPKGDACE YAHGVFESWL HPAQYRTRPC  300
KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSPRSAAMN AVDMTTLSPL ALGSSSLPMP  360
TTSTPPMSPL ATSSSPKTGG LWQNNFNLTP PALQLPGSRL KTTFSARDFD LEMELLELEN  420
QLQQQQLIDE ISSLSSPSCW SKEYGRLGDL KPSNLDDAFG SLDPSLLSPL KGLSIKSGIQ  480
AQLQSPTGLQ IRQNLNQLRS GYPTNLTSSP VRKPSAFGYD SSAAVAAAVM NSRSSAFAKR  540
SQSFIDRGAV TNSAGLATSA NPTTTMSSNN SDWSSPNGKL DWGIQGDELN KLRKSASFGF  600
RNNHPAARAT DMMASNMEEP DVSWVHSLVK DATPMGTATL PSWVEQMYIE QQEQMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26850.0boll| embryo| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681641.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A1U8IU970.0A0A1U8IU97_GOSHI; zinc finger CCCH domain-containing protein 29-like isoform X1
STRINGGorai.010G196500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein