PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1489
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20799.5 Da    PI: 11.424
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1489genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-211057249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  ++++  rqvtfskRr g++KKA+EL +LC+a+va+++fs+ gk y +
  Gh_D06G1489 10 MVKDSGSRQVTFSKRRSGLFKKANELATLCAAQVAIVVFSPGGKPYSF 57
                 5788999************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.67E-28175IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.492161IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-20323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRRKIEMKM VKDSGSRQVT FSKRRSGLFK KANELATLCA AQVAIVVFSP GGKPYSFGHP  60
SVEAVAEQFL TLNLRPRVSI PRQLVAQPQR EAKVERLSRR LNAILNKLQA EMKRGEMLDE  120
AVKAARKRSK FRKPINEINL YELIEMRKAM GQLRERVKQR MSEIEASSSL LLLSKMATKQ  180
AES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.221430.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364510.0HM236451.1 Gossypium hirsutum MADS35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016683497.11e-129PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLV9I2A81e-128V9I2A8_GOSHI; MADS35
STRINGGorai.010G165500.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-41AGAMOUS-like 29