PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D06G0878

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 188aa MW: 22220 Da PI: 10.2773

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0878	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.8	1.4e-18	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++gilKKA+ELS+LCd+e+ +++ s++gk Gh_D06G0878 10 RLEDMKARQAKYSKRKKGILKKAKELSILCDVEIVLLLSSPSGK 53 6788999**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.848	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.89E-21	2	57	No hit	No description
SuperFamily	SSF55455	8.76E-22	2	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-17	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MGRRKLKIQR LEDMKARQAK YSKRKKGILK KAKELSILCD VEIVLLLSSP SGKPTLFVGQ 60 NPNGLYCILQ KVSNMPFVER EERRAYTLEM LKKFYVNWES KFDPLSLPRN NNVDTLKLYE 120 DQLQELKDKL TKKSKILRDW KYPENVEDLN QIKFMEDHLI ASLNGLRNRK NQLAMEQQSK 180 ERYLEVGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448418.1	1e-130	PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBL	A0A0D2V855	1e-129	A0A0D2V855_GOSRA; Uncharacterized protein
STRING	Gorai.010G096200.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69540.1	9e-28	AGAMOUS-like 94