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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 130aa MW: 15483.4 Da PI: 10.2645 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.5 | 7.1e-18 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++ rq +skR+ gilKKA+ELS+LCd+e +++ s+tgk Gh_D06G0877 11 LKDMKARQAKYSKRKRGILKKAKELSILCDVELVLLLSSPTGK 53 677889***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.923 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.07E-19 | 2 | 57 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-22 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-16 | 12 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MGRKKLKIQR LKDMKARQAK YSKRKRGILK KAKELSILCD VELVLLLSSP TGKPTLFVGQ 60 NPNGLYNILQ KVSNMPFVER EERDLKNLEI IVYLNQIEFM EDYLIESLNE LRNMKVPFFF 120 LIYKYYDNKF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448418.1 | 3e-49 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q7X9I0 | 4e-21 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A0D2U5P8 | 2e-70 | A0A0D2U5P8_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.010G096100.1 | 3e-71 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7330 | 18 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 7e-24 | AGAMOUS-like 94 |
Publications ? help Back to Top | |||
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