PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0681

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 473aa MW: 53472.3 Da PI: 6.8308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0681	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4.2e-36	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgy 82 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + + Gh_D06G0681 46 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTTDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETR 141 799**********.99*****5553344444434666646******.566777899**************73334555544778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Gh_D06G0681 142 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 ********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-38	42	207	IPR003441	NAC domain
PROSITE profile	PS51005	32.848	46	207	IPR003441	NAC domain
Pfam	PF02365	2.4E-16	47	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MNKSNLGSVS SSDLIDAKLE EHQLCGSKHC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTTDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRTA TAVEVSNAND PNSRRDSGSG 240 SCSSKEVIPL RDEVTGAGVA AALSSYAAGA MDIQQLKSDH FSFTPFRKSF DEVGIGEASA 300 AREAPVQGTC EEIPEHPRPH HMAHDHHQQQ QQHQQQQQQQ QQHHQHHAHH QIATTAFHIS 360 RPSHPISTII TPPPLHHTSI ILDEDSFHVS RIMLQNESFQ QQQQQQHQQQ QQQQQQQQHY 420 KLAGRSASGL EELIMGCTSS DIKEESSITN PQEAEWLKYS SFWPDPDNQD HHG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MNKSNLGSVS SSDLIDAKLE EHQLCGSKHC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTTDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRTA TAVEVSNAND PNSRRDSGSG  240
SCSSKEVIPL RDEVTGAGVA AALSSYAAGA MDIQQLKSDH FSFTPFRKSF DEVGIGEASA  300
AREAPVQGTC EEIPEHPRPH HMAHDHHQQQ QQHQQQQQQQ QQHHQHHAHH QIATTAFHIS  360
RPSHPISTII TPPPLHHTSI ILDEDSFHVS RIMLQNESFQ QQQQQQHQQQ QQQQQQQQHY  420
KLAGRSASGL EELIMGCTSS DIKEESSITN PQEAEWLKYS SFWPDPDNQD HHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-13	44	188	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847202	0.0	KC847202.1 Gossypium hirsutum NAC domain protein NAC25 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682534.1	0.0	PREDICTED: probable nuclear hormone receptor HR38 isoform X3
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1U8J2U5	0.0	A0A1U8J2U5_GOSHI; probable nuclear hormone receptor HR38 isoform X3
STRING	Gorai.010G078900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-148	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]