PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0302

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 312aa MW: 35156.5 Da PI: 8.219

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0302	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	8.9e-06	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Gh_D06G0302 155 FSCHVCFKTFNRYNNLQMHM 174 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.99E-5	137	177	No hit	No description
PROSITE profile	PS50157	10.055	155	182	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-4	155	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.64E-5	221	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MLFSFNCIIL QPPYLFSLNI LSIGLGNPII KPFQKLNKNK PTFFLVLFFL MEPSDVSCDS 60 DLVSSTNYHT DMEPLDLFPG AMHESLEPMP LLSYENPKPC SEEDKEDVTV ALHIGLPDPS 120 NGSNTNSSKE NIANGGGKQF WIPTPEQILI GFTNFSCHVC FKTFNRYNNL QMHMWGHGSQ 180 YRKGPESLKG TQPPAMLGIP CYCCAEGCKN NIEHPRAKPL KDFRTLQTHY KRKHGLKPFM 240 CRKCGKFLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK DHIKAFGSGH GPFPPSFDGV 300 EVLEDTASSL HV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23065	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269\|PubMed:11782451}.
Uniprot	TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269\|PubMed:11782451}.

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580084	1e-109	JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682975.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-110	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1U8IY06	0.0	A0A1U8IY06_GOSHI; protein TRANSPARENT TESTA 1-like
STRING	Gorai.010G039600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-112	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]