 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D06G0289 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 260aa MW: 29995.6 Da PI: 4.8895 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D06G0289 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.5 | 5.5e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ F +++ e++ +LA++lgL+ rqV +WFqNrRa++k
Gh_D06G0289 61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 114
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 126 | 1.7e-40 | 60 | 152 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls +qvk+LE++F+ +kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEkdy++Lk++ydalk ++++Leke+ L ++l++
Gh_D06G0289 60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKVLEKDYAMLKANYDALKLDHDNLEKEKLGLIAKLRD 152
69***********************************************************************************99999875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MKRLSPSPSL DAFMSISQPK VDYAEEKSSK KHQIYSKEFQ AMLDGLDEED SLEEGGQATE 60
KKRRLSMHQV KALEKNFDVG NKLEPERKVK LAEELGLQPR QVAIWFQNRR ARWKTKVLEK 120
DYAMLKANYD ALKLDHDNLE KEKLGLIAKL RDLKSKLKEE CPSFSVRNKE QGCCENDDDD 180
DCNGIVKEES NVMNGSSSSS DSSNNHKWFK PFESRMDMGY TYDEPELVEL EERSMFSAEE 240
SCGFFSVDQA PSLQWYFTGQ
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243121 | 1e-172 | AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence. |
