PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0254

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 297aa MW: 31901.4 Da PI: 5.8121

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0254	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.8	1.1e-16	206	242	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg+ Gh_D06G0254 206 CTHCGISSkaTPMMRRGPSGPRSLCNACGLFWANKGT 242 ***9999***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	13.071	75	110	IPR010399	Tify domain
SMART	SM00979	2.4E-8	75	110	IPR010399	Tify domain
Pfam	PF06200	3.2E-10	78	109	IPR010399	Tify domain
Pfam	PF06203	3.8E-15	142	184	IPR010402	CCT domain
PROSITE profile	PS51017	12.431	142	184	IPR010402	CCT domain
PROSITE profile	PS50114	9.367	200	250	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.5E-14	200	253	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.75E-12	203	252	No hit	No description
Gene3D	G3DSA:3.30.50.10	8.9E-16	204	246	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.05E-14	205	250	No hit	No description
Pfam	PF00320	1.6E-14	206	242	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	206	233	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYGQSQPMNI PPQIAGSGAD IDDDVSASVS VDNHHIVTYE APSLDDVGGV DDVATNPFYA 60 TAAATSASGL DVVPRGDGAS QLTLSFRGQV YVFDAITPEK FHAVLLLLGG CELTSGPHGV 120 EMSSQNLRVV GMDFPRSNQP HRAASLDRFR KKRKERCFDK KVRYGVRQEV ALRMQRNKGQ 180 FTSSRKSDGD YGSCSQDDDN LADTVCTHCG ISSKATPMMR RGPSGPRSLC NACGLFWANK 240 GTLRDIPKKT HEHSPTPVEQ GESEPNDSDS GTAIPTESNV VPFSNGDDSA LIGIAEH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	RKKRKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9484	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451764.1	0.0	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	6e-79	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A0D2U879	0.0	A0A0D2U879_GOSRA; Uncharacterized protein
STRING	Gorai.010G033500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5006	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	8e-82	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]