PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0245
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 31761.2 Da    PI: 7.0327
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0245genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-264190251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v ifsstgkly+++s
  Gh_D06G0245 41 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVTIFSSTGKLYDFAS 90
                 8***********************************************86 PP
2K-box87.23.2e-29109202699
        K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +    +++ + +q+e+a L+++++nLq+++R+++Ge+L+ L +keLq+Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L kk+ 
  Gh_D06G0245 109 QLGSPNSEVKFWQREAAILRQKLQNLQENHRQMMGEELSGLGVKELQNLESQLEMSLRGVRIKKDQILMNEIQELNRKGNIIHQENVELYKKVY 202
                  334678899*********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-343291IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.523292IPR002100Transcription factor, MADS-box
CDDcd002651.39E-4334109No hitNo description
SuperFamilySSF554558.37E-3134122IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263454IPR002100Transcription factor, MADS-box
PfamPF003192.1E-244188IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-265469IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-266990IPR002100Transcription factor, MADS-box
PfamPF014863.4E-27114201IPR002487Transcription factor, K-box
PROSITE profilePS5129715.464117207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAFLYANDNQ GQNDVSETSV CLLSLTPVPH FLSKGKIVIR RIDNSTSRQV TFSKRRNGLL  60
KKAKELAILC DAEVGVTIFS STGKLYDFAS TSMRSIIERY NKAKEEHQQL GSPNSEVKFW  120
QREAAILRQK LQNLQENHRQ MMGEELSGLG VKELQNLESQ LEMSLRGVRI KKDQILMNEI  180
QELNRKGNII HQENVELYKK VYETRDVDGA NKDSLLTNGL GIGEDSQVPV CLQLCQPQQQ  240
SYETPTRATN MGYIPLYMLD FDLMQISVPQ FDVHLFSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-1832117184MEF2C
5f28_B6e-1832117184MEF2C
5f28_C6e-1832117184MEF2C
5f28_D6e-1832117184MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in leaves, moderate levels in roots, seedlings and stems, and at low levels in flowers, pollen and siliques. Accumulates in leaf guard cells and trichomes. Also present in epidermal cells of roots (PubMed:11115127, PubMed:12837945, PubMed:12949148). Expressed in mature guard cells (PubMed:17704216). {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:17704216}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556590.0KC155659.1 Gossypium hirsutum MADS box protein MADS64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645598.11e-169PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotA2RVQ51e-99AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A1U8MZB01e-149A0A1U8MZB0_GOSHI; MADS-box transcription factor 23-like
STRINGXP_006472406.11e-129(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-95AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]