PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0225
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 364aa    MW: 41801.7 Da    PI: 6.5796
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0225genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092913262055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Gh_D06G0225 291 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 326
                  4679*****************************885 PP
2ELK37.93.7e-13246267122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Gh_D06G0225 246 ELKNHLLRKYSGYLSSLKQELS 267
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-23102146IPR005540KNOX1
PfamPF037909.7E-23103145IPR005540KNOX1
SMARTSM012561.2E-26153204IPR005541KNOX2
PfamPF037918.1E-23158202IPR005541KNOX2
SMARTSM011883.5E-7246267IPR005539ELK domain
PROSITE profilePS5121311.296246266IPR005539ELK domain
PfamPF037892.5E-10246267IPR005539ELK domain
PROSITE profilePS5007113.005266329IPR001356Homeobox domain
SuperFamilySSF466896.84E-20267341IPR009057Homeodomain-like
SMARTSM003898.8E-13268333IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27271332IPR009057Homeodomain-like
CDDcd000861.49E-11278330No hitNo description
PfamPF059201.4E-16286325IPR008422Homeobox KN domain
PROSITE patternPS000270304327IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEEYNQINEN SSTSRGNFLY ASQVLASNGS PYGRTSSGSI PPVLTSFHLQ PSDQHPIVKT  60
EASTSQHAQK FHYNNNNNNP LLRGHQPIHH QQKGNESSSE VEAIKAKIIA HPQYSNLLEA  120
YMDCQKVGAP PEVVVRLAAV RQEFEARQRS SVTSRDNSKD PELDQFMEAY YDMLVKYREE  180
LTRPIQEAWD FMRRIEAQLN MLGNGPVRIF NSDEKCEGVG SSEEDQDNSG GETELPEIDP  240
RAEDRELKNH LLRKYSGYLS SLKQELSKKK KKGKLPKEAR QKLLSWWELH YKWPYPSETE  300
KVALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNAALYM DVHYMGDGPY  360
CLGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.17550.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270501e-129HQ527050.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DDKEC simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452521.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0D2U5430.0A0A0D2U543_GOSRA; Uncharacterized protein
STRINGGorai.010G029000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-144KNOTTED-like from Arabidopsis thaliana