PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0062
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 380aa    MW: 40440.7 Da    PI: 9.2136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0062genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-054769123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Gh_D06G0062 47 FICEICNKGFQRDQNLQLHRRGH 69
                 89*******************88 PP
2zf-C2H2140.00015125147123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k++  ks+ + H++++
  Gh_D06G0062 125 WRCERCSKTYAVKSDWTAHLKSC 147
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-64669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.61E-64669No hitNo description
PfamPF121714.3E-54769IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0224769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8454769IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035523090120IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.61E-6120145No hitNo description
SMARTSM00355120125145IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAVSLIEAFQ QTDGVQSKKK RNLPGMPDPE AEVISLSPKS LLATNRFICE ICNKGFQRDQ  60
NLQLHRRGHN LPWKLRQRTD GNETRKKRVY VCPETSCVHH NAARALGDLT GIKKHYCRKH  120
CEKKWRCERC SKTYAVKSDW TAHLKSCGTK EYKCNCGTVF SRRDSFYTHR AFCDALAEEN  180
ARAQAATFSP PPLTQSTTTM VSPGLSTQSS EMLEIPMGLS PPDPPPPTTS ISASNGDVLV  240
TIFASTPPLE TTSLSLSSPL YLSNNSSSSI FTAPSLQPAM SATALLQKAA QMGAAATSSP  300
SLLRGLSFAV PSSSSTTPST GHKPTSTLDL LGLGICGGGG GGRGGTSNGL SALFTQFGGG  360
FNGEPAATTS YGAPNSSSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-30122182464Zinc finger protein JACKDAW
5b3h_F6e-30122182464Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17386KLRQRTDGNETRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452690.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-121IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0D2U6Z20.0A0A0D2U6Z2_GOSRA; Uncharacterized protein
STRINGGorai.010G011200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3650822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-99indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]