PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0030
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 526aa    MW: 59304.5 Da    PI: 6.6303
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0030genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-093013381954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LAk++gLt +qV +WF N R +
  Gh_D06G0030 301 FEHflHPYPKDSEKIMLAKQTGLTRNQVANWFINARVR 338
                  664459******************************88 PP
2BELL125.32.3e-40164235172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqelq+kk+kLls+l+eVd+ Y+qy++q+++++ssF+ vag+g+akpYtslAl++iSrhFrcL+dai++qi
  Gh_D06G0030 164 ERQELQNKKTKLLSMLDEVDRGYRQYYHQMKILMSSFDSVAGCGAAKPYTSLALQTISRHFRCLRDAISNQI 235
                  79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-56103233IPR006563POX domain
PfamPF075265.5E-47109232IPR006563POX domain
PROSITE profilePS5007112.406279342IPR001356Homeobox domain
CDDcd000862.33E-12282343No hitNo description
SMARTSM003896.7E-10282346IPR001356Homeobox domain
SuperFamilySSF466891.84E-17283349IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28285348IPR009057Homeodomain-like
PfamPF059201.3E-17299338IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MATYYPSFTN RRDDLSIQDE KPVPYRASSM GEFTEILSGT SLIPPCSDSL QLVNGRLNIT  60
MSAVNCQSQG LSLSLGSEIP PDVSLPSLPC QYQAYSDIYQ FQPGFTSTIS NSKYLKVVQE  120
LLNEVINVQQ ALRQSDFDKN VSSQLKSSES NESVNNLSKI SPTERQELQN KKTKLLSMLD  180
EVDRGYRQYY HQMKILMSSF DSVAGCGAAK PYTSLALQTI SRHFRCLRDA ISNQIQLTQR  240
SLGEHDNSLN NQGSVIPRLR YVDHQLRQQR ALQQFGVMRN AWRPQRGLPE SSVSVLRAWL  300
FEHFLHPYPK DSEKIMLAKQ TGLTRNQVAN WFINARVRLW KPMIEEMYKE EFGEMDSNFK  360
SSLENAAKAT GENSSASEDR GEELHENITS KVACADNIQP GQVQYPKPDH IPDVEPNRPT  420
ARSMYQNIAN PYPNTVIPSN QHGHGTLMTG DTVYDLTELN GFAVGNQVSL ALGLRNHENK  480
VFTMSGSTNH KVDSPVGPET VDFRFMEPGN QQDRFGNPHI LHDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16288346563Homeobox protein Meis2
3k2a_B7e-16288346563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.247610.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723131.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A1U8M8H10.0A0A1U8M8H1_GOSHI; BEL1-like homeodomain protein 7
STRINGGorai.010G007800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-118BEL1-like homeodomain 7