PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0025

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 307aa MW: 34093.9 Da PI: 8.1359

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0025	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.2	1.5e-70	83	242	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....kskkqsalsstklssa 94 r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++ + + +kr++e+ ++ +l++t+ls + Gh_D06G0025 83 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQQEQQQfRGEIPKRQKENqggvVVTAVPSLACTRLSPT 180 67999***************************************************9999888777788888888767766677788888888766 PP DUF702 95 esk..keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + le ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+ Gh_D06G0025 181 TTAttSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 242 554015567778**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-66	86	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-27	88	130	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.6E-26	192	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNRGFEIWPQ YYYQQPQQAN VVSSTYPFGT 60 GPSRRTIAGG FNLSDESSSS RLRQGGINCQ DCGNQAKKDC LHLRCRTCCK SRGFQCQTHV 120 KSTWVPAAKR RERQQQLATL QQQQEQQQFR GEIPKRQKEN QGGVVVTAVP SLACTRLSPT 180 TTATTSGLEL GQFPPEVSSQ AVFRCVKVSA MDDVDEEFAY QTAVNIAGHV FKGILYDQGP 240 ESRYTGGGGG SRENSQQQQQ LNLMADMTTT VVATSSNIGT NMLDPSVYPA PINAFIAGTQ 300 FFPHPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583895	1e-127	JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452264.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9LQZ5	5e-86	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2P5QMV3	0.0	A0A2P5QMV3_GOSBA; Uncharacterized protein
STRING	Gorai.010G006800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	7e-79	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]