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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D05G3616 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
ERF |
| Protein Properties |
Length: 207aa MW: 23215 Da PI: 7.5831 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D05G3616 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 66.6 | 4.7e-21 | 20 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++ a+ l+g
Gh_D05G3616 20 PKYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDFAEDAARAYDTAAMTLRG 70
79********.**********883....5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MRRGRGPAAA AAAVPDGEEP KYRGVRKRPW GRFAAEIRDP WKKTRVWLGT FDFAEDAARA 60
YDTAAMTLRG PKAKTNFPIN PSNTTAFPID HHHRRLYPMG NFQDPDMNPQ RPTRSSMSST 120
VESFSGPRPT QPPPESVVSD RKYHHHRKPP VLPEDFHSDC DSSSSVVVDD GDMASSSCKQ 180
NQTLMPFDLN FPPLDEVDDL YCTALCL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF555288 | 0.0 | KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Galuschka C,Schindler M,Bülow L,Hehl R
AthaMap web tools for the analysis and identification of co-regulated genes.
Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
[PMID:17148485] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Giuntoli B,Perata P
Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
Plant Physiol., 2018. 176(2): p. 1143-1155
[PMID:29269576]
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