PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D05G3207

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 21366.5 Da PI: 4.532

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3207	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.2	1.2e-14	19	65	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 kri n+ +r vtfskR++g+l KA LS ++ ++ v+i+s++g++y Gh_D05G3207 19 KRIPNQKKRWVTFSKRKKGLLSKAARLSSITGEDIGVVIISEQGRFY 65 79*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.778	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.3E-15	11	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-17	12	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-13	20	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDEARPGRRG AGRRRIEIKR IPNQKKRWVT FSKRKKGLLS KAARLSSITG EDIGVVIISE 60 QGRFYISDNA DAVIDRYLSI ETGKDNNGDG RNQGIVEDDN NYDGDGLDDG VTLRLFPQEI 120 GQDDDHNDDG RFGNGIVMDK QGLNLNRWDN VWKINDGEIK GENCFMDLNK PPHDDDGDDG 180 AAADDTMIPF L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684535.1	1e-135	PREDICTED: pheromone receptor transcription factor-like
TrEMBL	A0A1U8J2H1	1e-134	A0A1U8J2H1_GOSHI; pheromone receptor transcription factor-like
TrEMBL	A0A2P5SK23	1e-134	A0A2P5SK23_GOSBA; Uncharacterized protein
STRING	Gorai.009G355900.1	1e-108	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18369	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17310.1	3e-11	M-type_MADS family protein