PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22065.2 Da PI: 9.879 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.2 | 2.1e-18 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien+ r +tfskRr gi KK ELS+LC+ e++ iifs+ gk +++ Gh_D05G2571 17 KMIENQDHRFITFSKRRSGIYKKIGELSTLCGSEILFIIFSPAGKPFTF 65 68*******************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.366 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-23 | 9 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-26 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-20 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MANTGKKTKG KQKIEIKMIE NQDHRFITFS KRRSGIYKKI GELSTLCGSE ILFIIFSPAG 60 KPFTFGHPSI EFIANRFLNG NIPVIDDMHA LIEAHCTVRI NKLIQLYNEV QSQIDASNET 120 QRVLAQQITS GTDSNRWWET PLDQLNPREL YERYSHFSKL LDLFHISRSK KIATASSTVA 180 PTGPAKDAPT NFPLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hbx_A | 4e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
1hbx_B | 4e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
1hbx_D | 4e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
1hbx_E | 4e-14 | 2 | 71 | 3 | 72 | SERUM RESPONSE FACTOR |
1k6o_B | 5e-14 | 2 | 66 | 2 | 66 | Serum response factor |
1k6o_C | 5e-14 | 2 | 66 | 2 | 66 | Serum response factor |
1srs_A | 4e-14 | 2 | 71 | 3 | 72 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
1srs_B | 4e-14 | 2 | 71 | 3 | 72 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684252.1 | 1e-145 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8J1N4 | 1e-144 | A0A1U8J1N4_GOSHI; agamous-like MADS-box protein AGL62 | ||||
STRING | Gorai.009G284300.1 | 1e-127 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-28 | AGAMOUS-like 57 |