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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 604aa MW: 65409.5 Da PI: 6.9474 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 1e-24 | 214 | 258 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++g+k+CErH++rgr+rsrk++e Gh_D05G2512 214 DPEPGRCRRTDGKKWRCSRDAVAGQKYCERHMNRGRHRSRKPVEG 258 79****************************************985 PP | |||||||
2 | QLQ | 56.8 | 6.6e-20 | 143 | 179 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +++T+ Q+++L++Q+l++Ky++an+PvP++Ll++i+k Gh_D05G2512 143 GPYTPCQWMELEHQALIFKYILANVPVPSNLLLPIRK 179 599********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.0E-11 | 143 | 179 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.113 | 144 | 179 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.4E-14 | 144 | 178 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.947 | 214 | 258 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.6E-21 | 215 | 257 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MDFGVVGLEG FIGSETATGF SSLGSDHQET NQKSYGSGGL FKHERSCNNE DELRSSKLAK 60 IHDDFSCYSK PLMFHHRNTL LRSNASIFFD EQEEQQMLSF SAPKPDALSV DRSSKNVTFP 120 HIYLTGYNNG GFNGANMHGL CKGPYTPCQW MELEHQALIF KYILANVPVP SNLLLPIRKS 180 LDSTDFSSFS GELFRPNTSM GWGAFQLGFS NNTDPEPGRC RRTDGKKWRC SRDAVAGQKY 240 CERHMNRGRH RSRKPVEGQP GHSVTATAAT TSKLMPNVSS SSASAVGPVG GSGEPNSLTS 300 ARQKYENLQL GGTSNLSAAA SLNRSILNKD TVGEKMPYTA AGLSMISPNG DLKSKENPFL 360 IPKQPISYEE NLRNGFGVVS SGELNPSHKS SSMINSRNFG SSQDLTSQET DSQQSFRRFI 420 DDRPKSQSHC SAISWPELDV QSYRTQLSIS IPMAASDFTS TTSSPNNENL TSSPLRLSRE 480 FDPINIGLGV GNVVNESNQK QANWIPVSWG TSIGGPLGEA LHSNGSTMVD LKNLSILNLM 540 TEDSENSPLV GSSPTGVLQK TTFASLSNSS AGSSPENNKT HEGVSHCNDL LGSNLVESSS 600 LPAT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20092 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687292.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A1U8JAD9 | 0.0 | A0A1U8JAD9_GOSHI; growth-regulating factor 1-like | ||||
STRING | Gorai.009G277500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 3e-88 | growth-regulating factor 1 |