PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2290
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 554aa    MW: 61677.9 Da    PI: 4.8429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2290genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.21.1e-1361865543374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L+ecA ++++g+ e a+a++++l++l+s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN 
  Gh_D05G2290 186 QMLIECAAVLAEGNIEGASAIINELRQLVSIHGDPPQRIAAYMVEGLAARVAASGKYLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANG 280
                  79*****************************************************************9...9************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHiiDfdi+qG Q+++L+q++a+ p++pp+lR+Tgv++p+s+   +  l+ +g rL+k+Ae lgv+fef++ va+r++ +++++L++
  Gh_D05G2290 281 AIIEAFKDEKRVHIIDFDINQGSQYITLIQSIAKLPGKPPHLRLTGVDDPDSVqrLNGGLQIIGLRLEKLAEVLGVSFEFQA-VASRTSLVTPSMLDC 377
                  ***************************************************99777889***********************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yys++f+sl+++lpres++r++vEr++l+r+i
  Gh_D05G2290 378 RPGEALVVNFAFQLHHMPDESVSTINQRDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSTVFESLDVTLPRESQDRMNVERQCLARDI 475
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vn+vaceg+er+er e ++kWr+r+++aGF++ p+s ++ + ++ l+r++ ++ y+++e+ g+l +gW++++L+++SaWr
  Gh_D05G2290 476 VNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSPNVIDMIRKLIREYCDR-YKLKEDLGALHFGWEGKSLIVASAWR 554
                  ***************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.046158535IPR005202Transcription factor GRAS
PfamPF035143.7E-134186554IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MSLVTSTEPA ITACRNTKLY SVQGSGDSSG LSTQMFGSDK HKPRCITDSY SSESYEKLFV  60
GSPSEELMHP SSSDVSESSI RQQDVSSYQP RDYLEVQSAD TLDDDTDKMK LMLQELERDL  120
LGDNDVDVGD MFGTGLNMEI DGEWSGPVRT EPIHEPPKES SSSESNLSSI SNNKEASHFS  180
SRTPKQMLIE CAAVLAEGNI EGASAIINEL RQLVSIHGDP PQRIAAYMVE GLAARVAASG  240
KYLYKALRCK EPPSSDRLAA MQILFEVCPC FKFGFMAANG AIIEAFKDEK RVHIIDFDIN  300
QGSQYITLIQ SIAKLPGKPP HLRLTGVDDP DSVQRLNGGL QIIGLRLEKL AEVLGVSFEF  360
QAVASRTSLV TPSMLDCRPG EALVVNFAFQ LHHMPDESVS TINQRDQLLR MVKSLNPKLV  420
TVVEQDVNTN TSPFFPRFIE AYSYYSTVFE SLDVTLPRES QDRMNVERQC LARDIVNIVA  480
CEGEERIERY EVAGKWRARM TMAGFTSCPM SPNVIDMIRK LIREYCDRYK LKEDLGALHF  540
GWEGKSLIVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6319055324377Protein SCARECROW
5b3h_D3e-6319055324377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.139970.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698391.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_016698392.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_016698393.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_016698394.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_016698395.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_016698396.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2P5R1C50.0A0A2P5R1C5_GOSBA; Uncharacterized protein
STRINGGorai.009G251800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]