PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2208
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 426aa    MW: 47122.2 Da    PI: 9.4249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2208genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05198220223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg+ F   +nL+ H+ + H
  Gh_D05G2208 198 SCPECGEIFMKAENLELHQAVrH 220
                  8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182197225IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-24222425No hitNo description
Gene3DG3DSA:3.90.228.105.0E-18223424IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAGSTHQRKP TMEAYQNQNK WPQKIDKPPS WAVLKGFFFG KHHHHQQEQE EQQKLQPKKK  60
VKKQKQQQKE QVMEETGKKC KKMRCSGSLC SNTKVIHCRP EMASPEVHKK RASFGSFDTS  120
SRSMKAPLRE LNGVAVSSTN SSSLLSVSSA APPASSSAGG SFGGMPFRRF SGCYECKLVV  180
DPLLGISKDP SLRGTICSCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT SKNIVEIIFK  240
SSWLKKQTPI CQIDRILKVQ NTPKTISKFE EYRDSIKSKA TKKHPRCIAD GNELLRFHCT  300
TFACSLGLSG STNLCNTIPK CNVCSIIKNG FKVAQETNGK GILTTATSGK AHDKAAGVED  360
GDYEKRAMLV CRVIAGRVKK NIMEGDNMEE YDSVAGAVGV YSDLDELFVF NPNAILPCFV  420
VIYRGF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151070.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731159.10.0PREDICTED: uncharacterized protein LOC107942032
TrEMBLA0A1U8N0040.0A0A1U8N004_GOSHI; uncharacterized protein LOC107942032
STRINGGorai.009G243200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-97C2H2-like zinc finger protein