PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2144

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 565aa MW: 64075 Da PI: 6.8841

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2144	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	67.7	2.5e-21	411	493	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrl+se+Dei+lL+ ++ + ak+g++p +d+++fy+fvkk i+++ Kk+fk++ k ++g++ +fsk+h+q++felsk iWg+ Gh_D05G2144 411 LFQRLFSEDDEIALLKSMLAYSAKKGADPCADMNGFYDFVKKLIHID-------------KKRFKNNAGK-DKGEDRTFSKAHEQNAFELSKNIWGK 493 69****************************************998.............89****.9*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.7E-17	412	492	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MGIPQEIDDY MKRTIDDSLG LPISTESLQL KLRSSEETQR RLREQYLLLL SKLKEKDQII 60 ERSKAEANMN AVALKRFVQE NQKLAAECAN LLSQCNKWEK ECLLYDRDRE ALMDFGNEAD 120 ERAKKAEIRV HELEEELGKL NEELRFYQHR YESQGIDSSS EGAIKEDNLL EPILAALICK 180 IEVTSGRAFL EANTSLESCL RLLKMWNRLR PSTQKILTLA AEVKTLKKDK EHLRINLSKA 240 EEEVKILFEE NNILDEANKR LVRQSREEKN LHDSGRKHTG SASAKEVTSS EEEEGSSTEE 300 DDEEDPKTQS SPLIQKSRPT RKPDSESESD TAVPIIKPIA IATKPMKGIL SAKKCRSSKP 360 LASLVRASSS KRAGEFAKEK RPKKKVRKEG LAIAPVVEEV KKTGEDAKKL LFQRLFSEDD 420 EIALLKSMLA YSAKKGADPC ADMNGFYDFV KKLIHIDKKR FKNNAGKDKG EDRTFSKAHE 480 QNAFELSKNI WGKEGISGKV ESSTDKKIDE LSKSFDSLLD KKFGVFDMEV EVVEVGLDMV 540 DGEKKTALEA KWRKLQMVQL AGFVE

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MGIPQEIDDY MKRTIDDSLG LPISTESLQL KLRSSEETQR RLREQYLLLL SKLKEKDQII  60
ERSKAEANMN AVALKRFVQE NQKLAAECAN LLSQCNKWEK ECLLYDRDRE ALMDFGNEAD  120
ERAKKAEIRV HELEEELGKL NEELRFYQHR YESQGIDSSS EGAIKEDNLL EPILAALICK  180
IEVTSGRAFL EANTSLESCL RLLKMWNRLR PSTQKILTLA AEVKTLKKDK EHLRINLSKA  240
EEEVKILFEE NNILDEANKR LVRQSREEKN LHDSGRKHTG SASAKEVTSS EEEEGSSTEE  300
DDEEDPKTQS SPLIQKSRPT RKPDSESESD TAVPIIKPIA IATKPMKGIL SAKKCRSSKP  360
LASLVRASSS KRAGEFAKEK RPKKKVRKEG LAIAPVVEEV KKTGEDAKKL LFQRLFSEDD  420
EIALLKSMLA YSAKKGADPC ADMNGFYDFV KKLIHIDKKR FKNNAGKDKG EDRTFSKAHE  480
QNAFELSKNI WGKEGISGKV ESSTDKKIDE LSKSFDSLLD KKFGVFDMEV EVVEVGLDMV  540
DGEKKTALEA KWRKLQMVQL AGFVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	387	KRPKKKVRK
2	380	386	RPKKKVR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.1582	2e-65	boll\| ovule\| root\| stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ751265	5e-71	JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016687142.1	0.0	PREDICTED: spindle pole body protein pcp1-like
TrEMBL	A0A0D2TPU4	0.0	A0A0D2TPU4_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G233500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-20	DNA-binding storekeeper protein-related transcriptional regulator