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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 270aa MW: 28570.7 Da PI: 8.5042 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF++ L H +H Gh_D05G2011 103 YKCSVCNKSFNSYQALGGHKASH 125 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.201 | 103 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-9 | 103 | 125 | No hit | No description |
SMART | SM00355 | 0.0034 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.0E-14 | 103 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-9 | 155 | 182 | No hit | No description |
Pfam | PF13912 | 1.1E-12 | 159 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 162 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MALEALNSPT TTATPPFHFE DTTNLHCLES FTKRKRSKRP RFDHVTTEEE YLALCLITLA 60 RGGDANSTNT SVIPHRHRSP TPTASPPPAP APAPTSTVQN VSYKCSVCNK SFNSYQALGG 120 HKASHRKLSG GNDDQSTSTT TSATAGGVIS SALNPSGKTH QCSICHKSFP TGQALGGHKR 180 CHYEGGAGNS ASVTASASGV TTSEGVGSTN TMSHISQRID FDLNLPALPE FSPANFFVSG 240 GDDEVESPHP AKKPRLLGRM PPKMQVNETN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10485 | 0.0 | boll| leaf| ovule| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445908.1 | 1e-171 | PREDICTED: zinc finger protein ZAT10-like | ||||
Swissprot | Q96289 | 4e-65 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | A0A2P5Q034 | 0.0 | A0A2P5Q034_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G218900.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 4e-58 | salt tolerance zinc finger |