PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 420aa MW: 46288.5 Da PI: 4.8186 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.8 | 7.9e-14 | 96 | 186 | 21 | 128 |
NAM 21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118 k ++g++l+ +vi++v+ y ++P++Lp ++f ++++++ t+ g Wk++ + +ev+s ++e +g +++L +y+gr+p+ +k Gh_D05G1875 96 KITSGSPLPN-NVIDHVNPYGIDPKNLP-------GGVWFLINSKEAV--------DTEGGEWKTKEEGREVFS-DSEMIGWRTSLEYYEGREPRQRK 176 3455666676.89**************9.......2344555544433........5899**************.999******************** PP NAM 119 tdWvmheyrl 128 t+Wvm+ +++ Gh_D05G1875 177 TEWVMEMFNV 186 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-20 | 74 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.703 | 76 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-5 | 88 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MTKFITNANK AKPRDTRRES YDHRSCMIAA NTNTPRVTTR LTNKEPTCLT RSVRLNFEQI 60 DYTGSEITMA TPVAAPPPDI SFKCTNMDEL FTCFVKITSG SPLPNNVIDH VNPYGIDPKN 120 LPGGVWFLIN SKEAVDTEGG EWKTKEEGRE VFSDSEMIGW RTSLEYYEGR EPRQRKTEWV 180 MEMFNVTVKR MCDEKEKQET SSLCRVSLVP SHEMVENGTG NHLIPHLDLD AHSSSRNPQH 240 EETEALAVAE RNEGENLFGT DSGGYDIGFF AGGNFLELKD LDNPASPSSS SDNSSAISIS 300 SGECFDSLAI LQELDEQILE QKDSGKKLDV LAGDKPNELD MVPATLGCLV SVEGSNSSSE 360 GDESFKTGVS GDPNNQVAKR AKVEEGPSSS RKPSESHGGR RKGGSLGGVL RKKYFCFMPF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX623067 | 1e-64 | JX623067.1 Gossypium hirsutum clone NBRI_GE70084 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687536.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
TrEMBL | A0A1U8JB56 | 0.0 | A0A1U8JB56_GOSHI; NAC domain-containing protein 76-like | ||||
STRING | Gorai.009G204700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24555 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 6e-08 | NAC domain containing protein 28 |