PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1782
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 424aa    MW: 46077.2 Da    PI: 9.4827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1782genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047179200323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ Cg++F+  ++L+ H+ + H
  Gh_D05G1782 179 CSQCGEVFPKIESLELHQAVrH 200
                  ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933177205IPR007087Zinc finger, C2H2
PROSITE patternPS000280179200IPR007087Zinc finger, C2H2
SuperFamilySSF563996.81E-24202421No hitNo description
Gene3DG3DSA:3.90.228.105.8E-15204421IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MALLTFLPEP AAEPMKVEQP SKRGRNPVKK QKEKQPSSWD QIKNLLSCKQ IEGSKVHDPS  60
KNNQLPHHHG YSKLGSSCKS ICSFNDVVHG NTRVVHRADN SPESSTVGQE TGLLRRKAGN  120
SSSTRSLSGS TRTNNSSTTY TTSSSSRAMQ FRKLSGCYEC RMIVDPSRYP SSRTTISACS  180
QCGEVFPKIE SLELHQAVRH AVSELGPDDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH  240
NTQRTIQRFE DCRDAVKTRA LNSTRKNPRC AADGNELLRF HCTTLSCSLG ARGSSSLCGS  300
IPGCGVCTII KQGFQKKGGG AAAAAEFKGV CTTASSGRAH DSLKCTDGRR AMLVCRVIAG  360
RAKRVTEDAP PFEEDNSGVA AAATGSYDSL AAYAGVYSNL EELVVFNPRA ILPCFVVIYK  420
AHES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.83150.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687654.10.0PREDICTED: uncharacterized protein LOC107905505 isoform X1
TrEMBLA0A1U8JH680.0A0A1U8JH68_GOSHI; uncharacterized protein LOC107905505 isoform X1
STRINGGorai.009G195000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein