PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1544

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 315aa MW: 34632.6 Da PI: 9.2244

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1544	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.6	2e-36	40	97	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + + lkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Gh_D05G1544 40 QPEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 97 56889***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-24	40	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-32	43	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.559	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGLSSKEVSS DGLGWSQSLL QAQTLELPKA IKRQHPQNQQ PEPLKCPRCD STNTKFCYYN 60 NYNKSQPRHF CKACKRHWTK GGTLRNVPVG GGRKNKRLKT SNSSNTTAVV ASAVIGNTST 120 TSVALKSSTT SGVNNRLNNF MAIQRSQQQR QDLQLPLADQ KKNTSNIQFQ VMGRPPSSSL 180 LQNPITCGDL DGKSFNINNN GVFLGSTSTT LSLPQTQGLQ FPFSSPSSSS FETTPTSLST 240 SFQSSSIYNY TSETMEDPTI TSIIMPTPSG TASHTWNVSI RSSDMDIANY WNWEDIDALV 300 SIDPNMPWDD SEIKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688017.1	0.0	PREDICTED: dof zinc finger protein PBF-like
TrEMBL	A0A1U8JCH4	0.0	A0A1U8JCH4_GOSHI; dof zinc finger protein PBF-like
STRING	Gorai.009G170200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	8e-32	Dof family protein